参考文献

参考文献

  1. Goldfarb D, Stoll S, eds. EPR Spectroscopy: Fundamentals and Methods. Wiley, 2018. Jeschke G, Chapter 19, “Dipolar Spectroscopy – Double-resonance Methods”, pp. 401–421;Borbat PP, Freed JH, Chapter 20, “Dipolar Spectroscopy – Single-resonance Methods”, pp. 425–459。相关正文已核读
  2. Bertrand P. Electron Paramagnetic Resonance Spectroscopy: Fundamentals. Springer, 2020. Chapter 7, “Effects of dipolar and exchange interactions on the EPR spectrum”, pp. 241–289. DOI: 10.1007/978-3-030-39663-3_7。相关正文已核读
  3. Weil JA, Bolton JR. Electron Paramagnetic Resonance: Elementary Theory and Practical Applications. 2nd ed. Wiley-Interscience, 2007. Section 2.7, “Dipolar Interactions Between Electrons”, p. 54;Chapter 6用于多电子自旋体系。相关段落已核读
  4. Hagen WR. Biomolecular EPR Spectroscopy. CRC Press, 2008. Chapter 11, “Interactions”。作为生物分子体系补充来源
  5. Goldfarb D, Stoll S, eds. EPR Spectroscopy: Fundamentals and Methods. Wiley, 2018. Jeschke G, Chapter 19, pp. 401–421,重点为§19.1、§19.2、§19.4、§19.5和§19.8。上传教材相关正文已核读
  6. Fábregas Ibáñez L, Jeschke G, Stoll S. DeerLab: a comprehensive software package for analyzing dipolar electron paramagnetic resonance spectroscopy data. Magnetic Resonance. 2020;1:209–224. DOI: 10.5194/mr-1-209-2020。公开全文已核对
  7. Vanas A, Soetbeer J, Breitgoff FD, et al. Intermolecular contributions, filtration effects and signal composition of SIFTER. Magnetic Resonance. 2023;4:1–18. DOI: 10.5194/mr-4-1-2023。公开全文相关模型已核对
  8. Hasanbasri Z, Tessmer MH, Stoll S, Saxena S. Modeling of Cu(II)-based protein spin labels using rotamer libraries. Physical Chemistry Chemical Physics. 2024;26:6806–6816. DOI: 10.1039/D3CP05951K。摘要、方法范围和主要结果已核对
  9. Goldfarb D, Stoll S, eds. EPR Spectroscopy: Fundamentals and Methods. Wiley, 2018. Chapter 8 “Spin Dynamics”;Chapter 11 “Pulse EPR”,尤其§11.3、§11.5和§11.6.4,pp. 217–232。相关正文与图11.13已核读
  10. Weil JA, Bolton JR. Electron Paramagnetic Resonance: Elementary Theory and Practical Applications. 2nd ed. Wiley-Interscience, 2007. Chapter 11 “Pulse Techniques”。用于回波和脉冲基础交叉核对
  11. Tait CE, Stoll S. Coherent pump pulses in double electron electron resonance spectroscopy. Phys Chem Chem Phys. 2016;18:18470–18485. DOI: 10.1039/C6CP03555H。用于相干泵浦及额外回波边界
  12. Goldfarb D, Stoll S, eds. EPR Spectroscopy: Fundamentals and Methods. Wiley, 2018. Chapter 9 “Relaxation Mechanisms”;Chapter 11 “Pulse EPR”,§11.7;Chapter 14 “Nitroxide Spin Probes”;Chapters 19–20。相关正文已核读
  13. Weil JA, Bolton JR. Electron Paramagnetic Resonance: Elementary Theory and Practical Applications. 2nd ed. Wiley-Interscience, 2007. Chapters 10–12。弛豫、回波与双共振基础已核对
  14. Hagen WR. Biomolecular EPR Spectroscopy. CRC Press, 2008. Chapters 11 and 14。生物样品与多中心相互作用补充
  15. Bertrand P. Electron Paramagnetic Resonance Spectroscopy: Fundamentals. Springer, 2020. Chapter 7。偶极、交换和弱耦合边界补充
  16. Goldfarb D, Stoll S, eds. EPR Spectroscopy: Fundamentals and Methods. Wiley, 2018. Chapter 19–21.
  17. JeschkeLab. DeerLab documentation and examples. Official documentation.
  18. JeschkeLab. DeerAnalysis public repository and 2026 release information. Official repository.
  19. Worswick SG et al. Deep neural network processing of DEER data. Science Advances. 2018;4:eaat5218. DOI: 10.1126/sciadv.aat5218.
  20. Stoll S, Schweiger A. EasySpin, a comprehensive software package for spectral simulation and analysis in EPR. Journal of Magnetic Resonance. 2006;178:42–55. DOI: 10.1016/j.jmr.2005.08.013.
  21. EasySpin developers. Spin system properties and pepper documentation. Official documentation.
  22. Edwards DT, Stoll S. Optimal Tikhonov regularization for DEER spectroscopy. Journal of Magnetic Resonance. 2018;288:58–68. DOI: 10.1016/j.jmr.2018.01.021.
  23. Jeschke G et al. DeerAnalysis2006—a comprehensive software package for analyzing pulsed ELDOR data. Applied Magnetic Resonance. 2006;30:473–498. DOI: 10.1007/BF03166213.
  24. Polyhach Y, Bordignon E, Jeschke G. Rotamer libraries of spin labelled cysteines for protein studies. Physical Chemistry Chemical Physics. 2011;13:2356–2366. DOI: 10.1039/C0CP01865A.
  25. Hagelueken G et al. MtsslWizard: in silico spin-labeling and generation of distance distributions in PyMOL. Applied Magnetic Resonance. 2012;42:377–391. DOI: 10.1007/s00723-012-0314-0.
  26. Goldfarb D, Stoll S, eds. EPR Spectroscopy: Fundamentals and Methods. Wiley, 2018. Chapter 19–21;重点案例见Chapter 20, Figure 20.6, pp.436–438.
  27. Dastvan R, Stoll S. Recent advances in quantifying protein conformational ensembles with dipolar EPR spectroscopy. Current Opinion in Structural Biology. 2025;94:103139. DOI.
  28. Karas H, Kuzin S, Stoll S, Jeschke G. Towards full optimisation of automated double electron–electron resonance spectroscopy. Physical Chemistry Chemical Physics. 2026;28:1241起. DOI.
  29. Pannier M, Veit S, Godt A, Jeschke G, Spiess HW. Dead-time free measurement of dipole–dipole interactions between electron spins. Journal of Magnetic Resonance. 2000;142:331–340. DOI.
  30. Fábregas-Ibáñez L, Tessmer MH, Jeschke G, Stoll S. Dipolar pathways in dipolar EPR spectroscopy. Physical Chemistry Chemical Physics. 2022;24:2504–2520. DOI.
  31. Fábregas-Ibáñez L, Mertens V, Ritsch I, von Hagens T, Stoll S, Jeschke G. Dipolar pathways in multi-spin and multi-dimensional dipolar EPR spectroscopy. Physical Chemistry Chemical Physics. 2022;24:22645–22660. DOI.
  32. Jeschke G, Pannier M, Godt A, Spiess HW. Dipolar spectroscopy and spin alignment in electron paramagnetic resonance. Chemical Physics Letters. 2000;331:243–252. DOI.
  33. Trenkler J, Endeward B, Sigurdsson ST, Prisner TF. Optimized shaped pulses for a 2D single-frequency technique for refocusing (SIFTER). Magnetic Resonance. 2025;6:281–315. DOI.
  34. Mandato AC, Moriglioni A, Saxena S. Q-Band Double Quantum Coherence ESR for Sensitive Nitroxide-Based Distance Measurements. Journal of Physical Chemistry B. 2025;129:7108–7118. DOI.
  35. Kunjir NC, et al. Measurements of short distances between trityl spin labels with CW EPR, DQC and PELDOR. Physical Chemistry Chemical Physics. 2013;15:19673–19685. DOI.
  36. Ritsch I, et al. Improving the accuracy of Cu(II)–nitroxide RIDME in the presence of orientation correlation in water-soluble Cu(II)–nitroxide rulers. Physical Chemistry Chemical Physics. 2019;21:9810–9830. DOI.
  37. Breitgoff FD, et al. UWB DEER and RIDME distance measurements in Cu(II)–Cu(II) spin pairs. Journal of Magnetic Resonance. 2019;308:106560. DOI.
  38. Azarkh M, Keller K, Qi M, Godt A, Yulikov M. How accurately defined are the overtone coefficients in Gd(III)-Gd(III) RIDME? Journal of Magnetic Resonance. 2022;339:107217. DOI.
  39. Azarkh M, et al. Gd(III) Relaxation-Induced Dipolar Modulation Enhancement for In-Cell EPR Distance Determination. Journal of Physical Chemistry Letters. 2019. DOI.
  40. Scherer A, Yildirim M, Drescher M. The effect of the zero-field splitting in light-induced pulsed dipolar EPR spectroscopy. Magnetic Resonance. 2023;4:27–46. DOI.
  41. Bieber A, Bücker D, Drescher M. Light-induced dipolar spectroscopy—A quantitative comparison between LiDEER and LaserIMD. 2018. arXiv:1806.04190.
  42. Bertran A, Henbest KB, De Zotti M, Gobbo M, Timmel CR, Di Valentin M, Bowen AM. Light-Induced Triplet–Triplet Electron Resonance Spectroscopy. Journal of Physical Chemistry Letters. 2021;12:80–85. DOI.
  43. Peter MF, et al. Cross-validation of distance measurements in proteins by PELDOR/DEER and single-molecule FRET. Nature Communications. 2022;13:4396. DOI.

返回顶部